Thursday, October 15, 2009

BLAST Tips

1, fastacmd

get DB info:
fastacmd -d $PDBBLST -I T
get sequence
fastacmd -d $PDBBLST -s 1a2k_A
get sequence with taxonomy info
fastacmd -d $BLASTDB/nr.fa -s XP_642131.1 -TT
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